Consider the 3-sphere
\[S^3=\{(z_1, z_2)\st z_i\in \CC, |z_1|^2+|z_2|^2=1\}.\]
We will first describe a new Heegaard diagram for \(S^3\). Take the function \(f=|z_1|^2-|z_2|^2\), and consider the sets
\begin{align*}
U_1=f^{-1}([0, 1]) && U_2=f^{-1}([-1, 0])
\end{align*}
These sets are fillings of the boundary
\[\Sigma_1:=f^{-1}(0)=\left\{(z_1, z_2)\st |z_1|^2=\frac{1}{2}, |z_2|^2=\frac{1}{2}\right\}=\{(e^{i\theta_1}, e^{i\theta_2}), \theta_1, \theta_2\in S^1\}.\]
which is a torus. Observe that \(\grad f\) is transverse to the boundary of \(\Sigma_1\), and that the critical locus of \(f\) can be parameterized by the cycles \(\{(e^{i\theta_1}, 0)\}\sqcup \{(0, e^{i\theta_2})\}\). It follows the sets \(U_1, U_2\) are diffeomorphic to \(S^1\times D^2\) and \(D^2\times S^1\) respectively. These are handlebodies, giving us a Heegaard decomposition.
We now Morsify \(f\) by taking a perturbation. Take \(\rho:[-1, 1]\to [0, \eps]\) satisfying the constraints:
\begin{align*}
\rho|_{[-1, -.5]}=\eps/10 && \rho|_{[0, 1]}=0 && |\rho'|<\eps
\end{align*}
The the function \(f+ \rho(f)\cos(\theta_1)+\rho(-f)\cos(\theta_2)\) has 4 critical points at \((\pm 1 , 0)\) and \((0, \pm 1)\). The attaching disks associated to the index 2 and index 1 critical points give the cycle \(\alpha_1=S^1\ times \{1\}\) and \(\beta_1=\{1\}\times S^1\) inside \(T^2\). See figure 0.0.2.